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Package: python-pbalign (0.3.0-1)

map Pacific Biosciences reads to reference DNA sequences (Python2)

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.

Other Packages Related to python-pbalign

  • depends
  • recommends
  • suggests
  • dep: blasr (>= 5.3+0)
    mapping single-molecule sequencing reads
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-pbcommand
    common command-line interface for Pacific Biosciences analysis modules
  • dep: python-pbcore
    Python library for processing PacBio data files
  • dep: python-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 2)
  • rec: hdf5-tools
    Hierarchical Data Format 5 (HDF5) - Runtime tools
  • rec: python-pbh5tools
    tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
  • sug: bowtie2
    ultrafast memory-efficient short read aligner
  • sug: gmap
    Package not available
  • sug: pbalign-doc
    documentation for pbalign

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