Package: pynast (1.2.2-3)
Links for pynast
Trisquel Resources:
Download Source Package pynast:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
- Andreas Tille
- Tim Booth
External Resources:
- Homepage [github.com]
Similar packages:
alignment of short DNA sequences
The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.
Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
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Download pynast
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 78.8 kB | 300 kB | [list of files] |