[ Source: r-other-hms-dbmi-spp ]
Package: r-other-hms-dbmi-spp (1.15-1)
Links for r-other-hms-dbmi-spp
Trisquel Resources:
Download Source Package r-other-hms-dbmi-spp:
- [r-other-hms-dbmi-spp_1.15-1.dsc]
- [r-other-hms-dbmi-spp_1.15.orig.tar.gz]
- [r-other-hms-dbmi-spp_1.15-1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [compbio.med.harvard.edu]
Similar packages:
GNU R ChIP-seq processing pipeline
R package for anlaysis of ChIP-seq and other functional sequencing data
* Assess overall DNA-binding signals in the data and select appropriate quality of tag alignment. * Discard or restrict positions with abnormally high number of tags. * Calculate genome-wide profiles of smoothed tag density and save them in WIG files for viewing in other browsers. * Calculate genome-wide profiles providing conservative statistical estimates of fold enrichment ratios along the genome. These can be exported for browser viewing, or thresholded to determine regions of significant enrichment/depletion. * Determine statistically significant point binding positions * Assess whether the set of point binding positions detected at a current sequencing depth meets saturation criteria, and if does not, estimate what sequencing depth would be required to do so.
Other Packages Related to r-other-hms-dbmi-spp
|
|
|
-
- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: r-api-3.4
- virtual package provided by r-base-core
-
- dep: r-base-core (>= 3.4.3-1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- dep: r-cran-catools
- GNU R package providing various utility functions
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download r-other-hms-dbmi-spp
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 161.8 kB | 286 kB | [list of files] |
i386 | 167.9 kB | 297 kB | [list of files] |