Package: r-cran-ape (5.0-1)
Links for r-cran-ape
Trisquel Resources:
Download Source Package r-cran-ape:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Dylan Aïssi
External Resources:
- Homepage [cran.r-project.org]
Similar packages:
GNU R package for Analyses of Phylogenetics and Evolution
This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Other Packages Related to r-cran-ape
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- or liblapack.so.3
- virtual package provided by libatlas3-base, liblapack3, libopenblas-base
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: r-api-3.4
- virtual package provided by r-base-core
-
- dep: r-base-core (>= 3.4.2-1ubuntu2)
- GNU R core of statistical computation and graphics system
-
- dep: r-cran-lattice
- GNU R package for 'Trellis' graphics
-
- dep: r-cran-nlme
- GNU R package for (non-)linear mixed effects models
-
- dep: r-cran-rcpp (>= 0.12.0)
- GNU R package for Seamless R and C++ Integration
-
- sug: clustalw
- global multiple nucleotide or peptide sequence alignment
-
- sug: muscle
- Multiple alignment program of protein sequences
-
- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- sug: r-cran-expm
- GNU R Computation of the matrix exponential and related quantities
-
- sug: t-coffee
- Multiple Sequence Alignment
Download r-cran-ape
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 1,395.9 kB | 1726 kB | [list of files] |
| i386 | 1,401.4 kB | 1733 kB | [list of files] |