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Package: r-bioc-rsamtools (1.30.0-1)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Other Packages Related to r-bioc-rsamtools

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.4
    virtual package provided by r-base-core
  • dep: r-base-core (>= 3.4.2-1ubuntu4)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biocgenerics (>= 0.1.3)
    generic functions for Bioconductor
  • dep: r-bioc-biocparallel
    BioConductor facilities for parallel evaluation
  • dep: r-bioc-biostrings (>= 2.37.1)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.1.3)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicranges (>= 1.21.6)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.3.7)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-s4vectors (>= 0.13.8)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-xvector (>= 0.15.1)
    BioConductor representation and manpulation of external sequences
  • dep: r-cran-bitops
    GNU R package implementing bitwise operations
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-shortread (>= 1.19.10)
    GNU R classes and methods for high-throughput short-read sequencing data
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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Architecture Package Size Installed Size Files
amd64 3,240.4 kB5334 kB [list of files]
i386 3,255.6 kB5360 kB [list of files]