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Package: blasr (5.3+0-1build1)

mapping single-molecule sequencing reads

Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. Such reads are thousands of bases long, with divergence between them and the genome being dominated by insertion and deletion error.

Other Packages Related to blasr

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libhdf5-100
    Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  • dep: libhdf5-cpp-100 (>= 1.10.0)
    Hierarchical Data Format 5 (HDF5) - C++ libraries
  • dep: libhts2
    C library for high-throughput sequencing data formats
  • dep: libpbbam
    Pacific Biosciences binary alignment/map (BAM) library
  • dep: libpbseq (>= 0~20160912)
    library for analyzing PacBio sequencing data
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download blasr

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Architecture Package Size Installed Size Files
amd64 670.5 kB2691 kB [list of files]