Package: augustus (3.3+dfsg-2build1)
Links for augustus
Trisquel Resources:
Download Source Package augustus:
- [augustus_3.3+dfsg-2build1.dsc]
- [augustus_3.3+dfsg.orig.tar.xz]
- [augustus_3.3+dfsg-2build1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Sascha Steinbiss
External Resources:
- Homepage [bioinf.uni-greifswald.de]
Similar packages:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Other Packages Related to augustus
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- dep: augustus-data
- data files for AUGUSTUS
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- dep: libbamtools2.4.0
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libboost-iostreams1.65.1
- Boost.Iostreams Library
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc1 (>= 1:4.0)
- GCC support library
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- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
Download augustus
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 1,117.2 kB | 4740 kB | [list of files] |
| i386 | 1,156.3 kB | 4984 kB | [list of files] |