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[ aramo ]
[ Source: optimir ]
Package: optimir (1.0-2)
Links for optimir
Trisquel Resources:
Download Source Package optimir:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Dylan Aïssi
External Resources:
- Homepage [github.com]
Similar packages:
Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.
Other Packages Related to optimir
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- rec: r-cran-gridextra
- GNU R package with extensions for the grid package
Download optimir
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 1,003.8 kB | 7404 kB | [list of files] |