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Package: python3-biotools (1.2.12-2)

Python3 bioinformatics utilities for high-throughput genomic sequencing

This package contains utilities like 

 biotools.align - align sequences (hybrid between Needleman-Wunsch and
                  Smith-Waterman which is used to find the subsequence
                  within a larger sequence that best aligns to a reference)
 biotools.annotation - create annotation files. The annotations can be used
                       to create a hierarchy among the annotations
 biotools.BLAST - manage BLAST databases and interface with the BLAST+
                  standalone program available from NCBI.
 biotools.clustal - interface to clustalw global (multiple nucleotide or
                    peptide sequence alignment)
 biotools.complement - creates the complement of a sequence, which can then be
                       reversed
 biotools.sequence - various tools to deal with sequences
 biotools.translate - translate a nucleotide using the standard genetic code

This package contains the Python3 module.

Other Packages Related to python3-biotools

  • depends
  • recommends
  • suggests
  • dep: clustalw
    global multiple nucleotide or peptide sequence alignment
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
    or ncbi-blast+-legacy
    NCBI Blast legacy call script
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language

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