Paket: physamp (1.1.0-1)

Links für physamp

Trisquel-Ressourcen:

Quellcode-Paket physamp herunterladen:

Betreuer:

Debian Med Packaging Team (E-Mail-Archiv)

Original Maintainers:

Debian Med Packaging Team (E-Mail-Archiv)
Andreas Tille
Julien Dutheil

Externe Ressourcen:

Homepage [jydu.github.io]

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

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dep: libbpp-core4 [i386]

Bio++ Core library

dep: libbpp-core4 (>= 2.4.0) [amd64]
dep: libbpp-phyl12 [i386]

Bio++ Phylogenetic library

dep: libbpp-phyl12 (>= 2.4.0) [amd64]
dep: libbpp-seq12 [i386]

Bio++ Sequence library

dep: libbpp-seq12 (>= 2.4.0) [amd64]
dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

dep: libc6 (>= 2.4) [i386]
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

physamp herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	264,8 kB	465 kB	[Liste der Dateien]
i386	268,4 kB	451 kB	[Liste der Dateien]

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