Paket: murasaki-mpi (1.68.6-6build5)

Links für murasaki-mpi

Trisquel-Ressourcen:

Quellcode-Paket murasaki herunterladen:

Betreuer:

Ubuntu Developers (E-Mail-Archiv)

Original Maintainers:

Debian Med Packaging Team (E-Mail-Archiv)
Andreas Tille

Externe Ressourcen:

Homepage [murasaki.dna.bio.keio.ac.jp]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

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dep: libboost-filesystem1.65.1

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-iostreams1.65.1

Boost.Iostreams Library
dep: libboost-regex1.65.1

regular expression library for C++
dep: libboost-system1.65.1

Operating system (e.g. diagnostics support) library
dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

dep: libc6 (>= 2.4) [i386]
dep: libgcc1 (>= 1:3.0) [amd64]

GCC support library

dep: libgcc1 (>= 1:4.2) [i386]
dep: libopenmpi2

high performance message passing library -- shared library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: murasaki-common

homology detection tool across multiple large genomes (common files)

murasaki-mpi herunterladen

Download für alle verfügbaren Architekturen
Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	608,0 kB	4035 kB	[Liste der Dateien]
i386	617,0 kB	3905 kB	[Liste der Dateien]

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