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Paket: macs (2.1.1.20160309-2)

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macs

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Betreuer:

Original Maintainers:

  • Debian Med Packaging Team (E-Mail-Archiv)
  • Michael R. Crusoe
  • Andreas Tille

Externe Ressourcen:

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Model-based Analysis of ChIP-Seq on short reads sequencers

MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples.

Andere Pakete mit Bezug zu macs

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • dep: cython
    C-Extensions for Python
  • dep: libc6 (>= 2.15) [amd64]
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: python
    interactive high-level object-oriented language (default version)
    dep: python (<< 2.8)
    dep: python (>= 2.7~)
  • dep: python-numpy
    Numerical Python adds a fast array facility to the Python language

macs herunterladen

Download für alle verfügbaren Architekturen
Architektur Paketgröße Größe (installiert) Dateien
amd64 2.416,5 kB5512 kB [Liste der Dateien]
i386 2.253,1 kB5747 kB [Liste der Dateien]