Paket: gbrowse (2.56+dfsg-3build1)

Links für gbrowse

Trisquel-Ressourcen:

Quellcode-Paket gbrowse herunterladen:

Betreuer:

Ubuntu Developers (E-Mail-Archiv)

Original Maintainers:

Debian Med Packaging Team (E-Mail-Archiv)
Olivier Sallou
Charles Plessy
Aaron M. Ucko
Andreas Tille

Externe Ressourcen:

Homepage [www.gbrowse.org]

GMOD Generic Genome Browser

Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features:

 * Simultaneous bird's eye and detailed views of the genome;
 * Scroll, zoom, center;
 * Attach arbitrary URLs to any annotation;
 * Order and appearance of tracks are customizable by administrator and
   end-user;
 * Search by annotation ID, name, or comment;
 * Supports third party annotation using GFF formats;
 * Settings persist across sessions;
 * DNA and GFF dumps;
 * Connectivity to different databases, including BioSQL and Chado;
 * Multi-language support;
 * Third-party feature loading;
 * Customizable plug-in architecture (e.g. run BLAST, dump & import many
   formats, find oligonucleotides, design primers, create restriction maps,
   edit features).

Andere Pakete mit Bezug zu gbrowse

hängt ab von

empfiehlt

schlägt vor

dep: apache2 (>= 2.4)

Apache HTTP Server

oder httpd-cgi

virtuelles Paket, bereitgestellt durch aolserver4-core, aolserver4-daemon, apache2, lighttpd, mini-httpd, nginx-core, nginx-extras, nginx-full, nginx-light, tntnet, yaws
dep: bioperl

Perl tools for computational molecular biology
dep: libbio-coordinate-perl

BioPerl modules for working with biological coordinates
dep: libbio-graphics-perl (>= 2.31)

Generate GD images of Bio::Seq objects
dep: libcgi-session-perl

persistent session data in CGI applications
dep: libdbd-sqlite3-perl

Perl DBI driver with a self-contained RDBMS
dep: libgd-gd2-noxpm-perl

virtuelles Paket, bereitgestellt durch libgd-perl

oder libgd-gd2-perl

virtuelles Paket, bereitgestellt durch libgd-perl
dep: libhttp-daemon-perl

simple http server class
dep: libio-string-perl

Emulate IO::File interface for in-core strings
dep: libjs-prototype

JavaScript Framework for dynamic web applications
dep: libjs-scriptaculous

JavaScript library for dynamic web applications
dep: libjson-perl

module for manipulating JSON-formatted data
dep: libstatistics-descriptive-perl

Perl module for basic descriptive statistical functions
dep: libterm-readkey-perl

perl module for simple terminal control
dep: libvm-ec2-perl

module providing controls on Amazon EC2 and Eucalyptus
dep: libwww-perl

simple and consistent interface to the world-wide web
dep: lsb-base (>= 3.0-6)

Linux Standard Base init script functionality
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: sqlite3

Command line interface for SQLite 3

rec: apache2 (>= 2.4.6-4~)

Apache HTTP Server

oder httpd

virtuelles Paket, bereitgestellt durch aolserver4-core, aolserver4-daemon, apache2, ebhttpd, lighttpd, micro-httpd, mini-httpd, nginx-core, nginx-extras, nginx-full, nginx-light, tntnet, webfs, yaws

sug: gbrowse-calign

CAlign helper
sug: gbrowse-data

Sample data to use GBrowse
sug: libfile-nfslock-perl

perl module to do NFS (or not) locking

gbrowse herunterladen

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