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[ Quellcode: sga  ]

Paket: sga (0.10.15-7)

Links für sga

sga

Trisquel-Ressourcen:

Quellcode-Paket sga herunterladen:

Betreuer:

Original Maintainers:

  • Debian Med Packaging Team (E-Mail-Archiv)
  • Michael R. Crusoe
  • Andreas Tille

Externe Ressourcen:

Ähnliche Pakete:

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Andere Pakete mit Bezug zu sga

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
    dynamic library for manipulating BAM (genome alignment) files
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [nicht armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6) [amd64, armhf]
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11) [amd64, armhf]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 5.2) [arm64, ppc64el]
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-ruffus
    Python3 computation pipeline library widely used in bioinformatics
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: abyss
    Paket nicht verfügbar

sga herunterladen

Download für alle verfügbaren Architekturen
Architektur Paketgröße Größe (installiert) Dateien
amd64 637,4 kB1683 kB [Liste der Dateien]
arm64 72,4 kB234 kB [Liste der Dateien]
armhf 649,0 kB1242 kB [Liste der Dateien]
ppc64el 78,4 kB318 kB [Liste der Dateien]