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[ Quellcode: pycoqc ]
Paket: pycoqc (2.5.2+dfsg-3)
Links für pycoqc
Trisquel-Ressourcen:
Quellcode-Paket pycoqc herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Andreas Tille
- Nilesh Patra
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+
Andere Pakete mit Bezug zu pycoqc
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-h5py
- general-purpose Python interface to hdf5
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- dep: python3-h5py-serial
- general-purpose Python interface to hdf5 (Python 3 serial)
-
- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-plotly (>= 4.1.0)
- Python 3 plotting library for publication-quality graphs
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-tqdm
- fast, extensible progress bar for Python 3 and CLI tool
pycoqc herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 35,6 kB | 193 kB | [Liste der Dateien] |