Paket: kallisto (0.46.2+dfsg-3)
Links für kallisto
Trisquel-Ressourcen:
Quellcode-Paket kallisto herunterladen:
- [kallisto_0.46.2+dfsg-3.dsc]
- [kallisto_0.46.2+dfsg.orig.tar.xz]
- [kallisto_0.46.2+dfsg-3.debian.tar.xz]
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Andreas Tille
Externe Ressourcen:
- Homepage [pachterlab.github.io]
Ähnliche Pakete:
near-optimal RNA-Seq quantification
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.
Andere Pakete mit Bezug zu kallisto
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- dep: libc6 (>= 2.33)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 6) [nicht ppc64el]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 9) [ppc64el]
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
kallisto herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 218,0 kB | 622 kB | [Liste der Dateien] |
| arm64 | 195,0 kB | 530 kB | [Liste der Dateien] |
| armhf | 209,4 kB | 448 kB | [Liste der Dateien] |
| ppc64el | 238,8 kB | 722 kB | [Liste der Dateien] |