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Paket: umis (1.0.8-1build1)

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process. 

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Andere Pakete mit Bezug zu umis

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  • dep: libc6 (>= 2.17)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-regex
    alternative regular expression module (Python 3)
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: python3-toolz
    List processing tools and functional utilities
  • sug: umis-examples
    tools for processing UMI RNA-tag data (examples)

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arm64 24,6 kB106 kB [Liste der Dateien]