Paket: ggd-utils (1.0.0+ds-1)

Links für ggd-utils

Trisquel-Ressourcen:

Quellcode-Paket ggd-utils herunterladen:

Betreuer:

Debian Med Packaging Team (E-Mail-Archiv)

Original Maintainers:

Debian Med Packaging Team (E-Mail-Archiv)
Nilesh Patra

Externe Ressourcen:

Homepage [github.com]

programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Andere Pakete mit Bezug zu ggd-utils

hängt ab von

empfiehlt

schlägt vor

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

ggd-utils herunterladen

Download für alle verfügbaren Architekturen
Architektur	Paketgröße	Größe (installiert)	Dateien
arm64	1.633,2 kB	4765 kB	[Liste der Dateien]

Sections