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Paket: anfo (0.98-9)

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anfo

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Short Read Aligner/Mapper from MPG

Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead).

Andere Pakete mit Bezug zu anfo

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • dep: libanfo0 (>= 0.98)
    Library for Short Read Aligner/Mapper from MPG
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libelk0
    implementation of Scheme (the Extension Language Kit)
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libpopt0 (>= 1.14)
    lib for parsing cmdline parameters
  • dep: libprotobuf23 (>= 3.12.4)
    protocol buffers C++ library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

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