mafft (7.490-1) unstable; urgency=medium * New upstream version 7.490 * Bump Standards-Version to 4.6.0 (no changes needed) -- Nilesh Patra Tue, 02 Nov 2021 19:00:24 +0530 mafft (7.487-1) unstable; urgency=medium * New upstream version 7.487 -- Nilesh Patra Mon, 16 Aug 2021 23:33:09 +0530 mafft (7.475-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) -- Steffen Moeller Mon, 07 Dec 2020 18:22:24 +0100 mafft (7.471-1) unstable; urgency=medium * Team upload. * New upstream version * debhelper-compat 13 (routine-update) -- Michael R. Crusoe Wed, 08 Jul 2020 15:59:06 +0200 mafft (7.467-1) unstable; urgency=medium * Team upload. * New upstream version -- Steffen Moeller Fri, 15 May 2020 13:15:02 +0200 mafft (7.464-1) unstable; urgency=medium * Team upload. * New upstream version -- Steffen Moeller Sun, 03 May 2020 19:21:55 +0200 mafft (7.453-2) unstable; urgency=medium * Team upload [ Steffen Möller ] * Update metadata - added ref to bio.tools [ Nilesh Patra ] * Add patch for GCC-10 Closes: #957512 [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) -- Nilesh Patra Fri, 17 Apr 2020 21:50:30 +0200 mafft (7.453-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.4.1 * Trim trailing whitespace. * Use secure URI in Homepage field. * Set fields Upstream-Name, Upstream-Contact in debian/copyright. * Remove obsolete fields Name, Contact from debian/upstream/metadata. -- Steffen Moeller Thu, 21 Nov 2019 17:27:17 +0100 mafft (7.429-1) unstable; urgency=medium * Team upload. * New upstream version * debhelper-compat 12 * Created with routine-update script. * Removed non-applying patch that removed bashism in bash script * Standards-Version: 4.4.0 -- Steffen Moeller Sat, 27 Jul 2019 12:56:27 +0200 mafft (7.407-2) unstable; urgency=medium [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #914715) * Also simplify debian/rules using --sourcedirectory. [ Andreas Tille ] * Remove trailing whitespace in debian/changelog -- Andreas Tille Sun, 02 Dec 2018 11:39:45 +0100 mafft (7.407-1) unstable; urgency=medium * Team upload. * New upstream version. 7.380–7.392 had a bug in the --add and --merge options * Standards-Version: 4.2.1 -- Steffen Moeller Wed, 28 Nov 2018 12:46:29 +0100 mafft (7.402-1) unstable; urgency=medium * New upstream version -- Andreas Tille Mon, 28 May 2018 16:17:10 +0200 mafft (7.397-1) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: - Added references to registries - yamllint cleanliness [ Andreas Tille ] * New upstream version * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 * Secure URI in watch file -- Andreas Tille Thu, 26 Apr 2018 22:18:47 +0200 mafft (7.310-1) unstable; urgency=medium * New upstream version * Move packaging from SVN to Git * Standards-Version: 4.1.0 (no changes needed) -- Andreas Tille Tue, 12 Sep 2017 14:38:51 +0200 mafft (7.307-1) unstable; urgency=medium * New upstream version * debhelper 10 * update d/copyright * d/watch: version=4 -- Andreas Tille Mon, 09 Jan 2017 15:58:36 +0100 mafft (7.305-1) unstable; urgency=medium * New upstream version -- Andreas Tille Tue, 16 Aug 2016 14:45:35 +0200 mafft (7.294-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * /usr/bin/mafft-sparsecore.rb is non-zero - remove the test in debian/rules * Better hardening -- Andreas Tille Wed, 18 May 2016 17:59:56 +0200 mafft (7.271-1) unstable; urgency=medium * New upstream version -- Andreas Tille Wed, 27 Jan 2016 19:44:13 +0100 mafft (7.270-1) unstable; urgency=medium * New upstream version -- Andreas Tille Wed, 30 Dec 2015 19:52:50 +0100 mafft (7.266-1) unstable; urgency=medium * New upstream version * Fix bashism Closes: #772305 -- Andreas Tille Sat, 05 Dec 2015 23:44:00 +0100 mafft (7.245-1) unstable; urgency=medium * New upstream version -- Andreas Tille Mon, 27 Jul 2015 21:06:58 +0200 mafft (7.221-1) unstable; urgency=medium * New upstream version -- Andreas Tille Fri, 29 May 2015 16:24:10 +0200 mafft (7.215-1) experimental; urgency=medium * Upload to experimental -- Andreas Tille Sat, 28 Feb 2015 23:42:02 +0100 mafft (7.215-0biolinux1) trusty; urgency=medium * New upstream. * Add convoluted cleanup of zero-byte file * Add mafft-profile to /usr/bin. -- Tim Booth Thu, 26 Feb 2015 12:00:41 +0000 mafft (7.205-1) unstable; urgency=medium * New upstream version -- Andreas Tille Thu, 23 Oct 2014 22:28:10 +0200 mafft (7.187-1) unstable; urgency=medium * New upstream release. * Conforms to Policy 3.9.6. -- Charles Plessy Sun, 05 Oct 2014 09:00:33 +0900 mafft (7.164-1) unstable; urgency=medium * New upstream version -- Andreas Tille Mon, 04 Aug 2014 15:04:10 +0200 mafft (7.158-1) unstable; urgency=medium * New upstream release. -- Charles Plessy Sun, 13 Jul 2014 20:26:22 +0900 mafft (7.157-1) unstable; urgency=medium * New upstream release. * debian/control - Added substitution variable ${perl:Depends}, used by Debhelper. - Recommend libwww-perl used by the script ‘seekquencer_premafft.pl’. -- Charles Plessy Wed, 18 Jun 2014 08:10:02 +0900 mafft (7.149-1) unstable; urgency=medium * New upstream release. -- Charles Plessy Sat, 12 Apr 2014 13:46:13 +0900 mafft (7.147-1) unstable; urgency=medium * New upstream release. -- Charles Plessy Sun, 30 Mar 2014 19:40:37 +0900 mafft (7.130-1) unstable; urgency=low * New upstream release. * Correct ‘XS-Testsuite’ to ‘Testsuite’ in debian/control. -- Charles Plessy Sun, 19 Jan 2014 08:25:50 +0900 mafft (7.127-1) unstable; urgency=low * New upstream release. * debian/tests/with-example-data: Don't write progress to stderr on success. Closes: #728190, thanks to Martin Pitt . * Conforms with Policy 3.9.5. * Pass CPPFLAGS within CFLAGS. -- Charles Plessy Sat, 30 Nov 2013 17:30:14 +0900 mafft (7.123-1) unstable; urgency=low * New upstream version. * Correct watch file, which was downloading the non-free version. This error did not affect the current stable release of Debian. * debian/tests/with-example-data: disable multithreading to stabilise output. -- Charles Plessy Wed, 16 Oct 2013 08:22:20 +0900 mafft (7.058-1) unstable; urgency=low * New upstream version incorporated debian/patches Closes: #715827, #715830, #715831, #715847, #715881 -- Andreas Tille Sun, 04 Aug 2013 08:51:10 +0200 mafft (7.055-1) unstable; urgency=low [ Charles Plessy ] * Signal the use of autopkgtest in debian/control (closes: #692683). [ Andreas Tille ] * New upstream version * debian/README.source: removed because redundant * debian/patches/hardening.patch: Enable propagation of hardening options * debian/control: use anonscm in Vcs fields -- Andreas Tille Tue, 30 Jul 2013 13:39:43 +0200 mafft (6.940-1) unstable; urgency=low [ Charles Plessy ] * New upstream release (no new license nor copyright statement). * Removed unnecessary build-dependance on quilt. * Test for regressions with autopkgtest insted of doing it at build time. (debian/control, debian/tests/control, debian/tests/with-example-data) * debian/control: - Removed 'Pre-Depends: dpkg (>= 1.15.6)' now that Ubuntu LTS 12.04 is out. - Increment Standards-Version to show conformance with Policy 3.9.4. - Removed DM-Upload-Allowed field. - Normalised with the command cme fix dpkg-control. - Use Debhelper 9 (also debian/compat). * Pass dpkg build flags in debian/rules. [ Andreas Tille ] * debian/upstream: - Single Reference field instead of Reference-* - Add additional reference from tasks file - Authors in BibTeX conform format -- Charles Plessy Sun, 14 Oct 2012 15:42:54 +0900 mafft (6.864-1) unstable; urgency=low * New upstream release. * Pre-Depends on dpkg (>= 1.15.6) for xz compression support (debian/control). * Renamed debian/README.Debian debian/README.test. * Track the new website in debian/watch. -- Charles Plessy Thu, 12 Jan 2012 19:00:31 +0900 mafft (6.860-1) unstable; urgency=low * New upstream release. * Simplified debian/watch. * Updated Homepage (debian/control). * Compress binary package with xz (debian/control). -- Charles Plessy Sun, 18 Sep 2011 14:43:10 +0900 mafft (6.859-1) unstable; urgency=low * New upstream release. * Converted debian/copyright to machine-readable (DEP 5) format. -- Charles Plessy Sat, 27 Aug 2011 12:06:00 +0900 mafft (6.857-1) unstable; urgency=low * New upstream version. * Enable multithread, correct FHS path (debian/rules). * Removed extra manpage copies instead of patching Makefile and installing via debhleper (debian/patches, debian/rules, debian/manpages). * Removed debian/dirs, not needed anymore. * Run the tests after installation, and allow them to fail (debian/rules). * Build when running debian/rules build (override typo, Closes: #636634). * Corrected VCS fields in debian/control. * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2 (debian/control, no changes needed). -- Charles Plessy Fri, 05 Aug 2011 09:54:09 +0900 mafft (6.850-1) unstable; urgency=low * New upstream version * Adapted patch to new upstream * Debhelper 8 (control + compat) * debian/rules: Switch to dh * debian/links: override broken symlinks created in Makefile -- Andreas Tille Sat, 12 Mar 2011 00:02:43 +0100 mafft (6.833-1) unstable; urgency=low * New upstream version -- Andreas Tille Wed, 17 Nov 2010 13:51:28 +0100 mafft (6.815-1) unstable; urgency=low * New upstream version * Switch to source format 3.0 (quilt) * Standards-Version: 3.9.1 (no changes needed) -- Andreas Tille Thu, 05 Aug 2010 10:29:50 +0200 mafft (6.811-1) unstable; urgency=low * New upstream version * Standards-Version: 3.8.4 (no changes needed) -- Andreas Tille Thu, 24 Jun 2010 13:08:06 +0200 mafft (6.717-1) unstable; urgency=low * New upstream version * Added a few informations about Upstream in debian/upstream-metadata.yaml. * Documented how this package is tested in debian/README.Debian. * Refreshed debian/copyright, using the verbatim upstream license, indented with a tabulation. -- Charles Plessy Mon, 14 Dec 2009 13:02:59 +0900 mafft (6.716-1) unstable; urgency=low * New upstream version -- Andreas Tille Tue, 03 Nov 2009 12:39:12 +0100 mafft (6.713-1) unstable; urgency=low [ David Paleino ] * debian/control: - removed myself from Uploaders [ Andreas Tille ] * New upstream version * debian/control: - Standards-Version: 3.8.3 (no changes needed) - s/Debian-Med/Debian Med/ - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby script in /usr/bin using blast and lynx. * debhelper 7 * No need for debian/patches/Securisation-by-mktemp-usage.patch any more * debian/watch: Handle -with.*-extensions naming - we are dealing with the without-extensions tarball in Debian -- Andreas Tille Mon, 28 Sep 2009 09:02:30 +0200 mafft (6.240-2) unstable; urgency=high [ Charles Plessy ] * debian/control: - Moved the Homepage: field out from the package's description. - Enhances: t-coffee. * Updated my email address. * Securisation of the temorary files of mafft-homologs: - debian/control: build-depend on quilt. - debian/rules: modified to use quilt. - debian/README.source: signals that the package uses quilt. - debian/patches: added a patch to use non-guessable temporary files (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs Kinkhorst for preliminary, Kazutaka Katoh for the final implementation, and Michael Schutte for the final review. - debian/mafft-homologs.1*, debian/README.Debian: document that the program is patched. [ David Paleino ] * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically. * debian/control: - B-D updated (see above) - added myself to Uploaders - moved XS-Vcs-* fields to Vcs-* - Updated to Standards-Version 3.7.3 (no changes needed) * debian/rules: - reflecting static build of manpages - minor changes -- Charles Plessy Mon, 25 Aug 2008 23:30:20 +0900 mafft (6.240-1) unstable; urgency=low * Initial release (Closes: #409640) -- Charles Plessy Sat, 9 Jun 2007 12:06:43 +0900