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Пакет: tree-ppuzzle (5.2-10)

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tree-ppuzzle

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Подобни пакети:

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Други пакети, свързани с tree-ppuzzle

  • зависимости
  • препоръчани
  • предложени
  • dep: libc6 (>= 2.7)
    GNU C Library: Shared libraries
    също и виртуален пакет, предлаган от libc6-udeb
  • dep: libopenmpi2
    high performance message passing library -- shared library
  • dep: libsprng2
    SPRNG Scalable Parallel RNG library -- library package
  • dep: openmpi-bin
    high performance message passing library -- binaries
  • rec: tree-puzzle-doc
    Reconstruction of phylogenetic trees by maximum likelihood (doc)
  • sug: phylip
    package of programs for inferring phylogenies
  • sug: treetool
    Пакетът не е наличен

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amd64 142,8 кБ348 кБ [списък на файловете]
i386 143,7 кБ372 кБ [списък на файловете]