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Пакет: sortmerna (2.1-2)

Връзки за sortmerna

sortmerna

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Изтегляне на пакет-източник sortmerna.

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Подобни пакети:

tool for filtering, mapping and OTU-picking NGS reads

SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.

Други пакети, свързани с sortmerna

  • зависимости
  • препоръчани
  • предложени
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    също и виртуален пакет, предлаган от libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: sse2-support [i386]
    prevent installation on processors without required instructions
  • rec: python
    interactive high-level object-oriented language (default version)

Изтегляне на sortmerna

Изтегляне за всички налични архитектури
Архитектура Големина на пакета Големина след инсталиране Файлове
amd64 521,7 кБ979 кБ [списък на файловете]
i386 519,6 кБ1013 кБ [списък на файловете]