Skip to content
Sections
>> Trisquel >> Пакети >> etiona >> science >> pirs
etiona  ] [  nabia  ] [  aramo  ]
[ Източник: pirs  ]

Пакет: pirs (2.0.2+dfsg-6)

Profile based Illumina pair-end Reads Simulator

The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.

The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.

The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.

To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.

Други пакети, свързани с pirs

  • зависимости
  • препоръчани
  • предложени
  • dep: fonts-liberation
    Fonts with the same metrics as Times, Arial and Courier
  • dep: gnuplot
    Command-line driven interactive plotting program.
    също и виртуален пакет, предлаган от gnuplot-nox, gnuplot-qt, gnuplot-x11
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    също и виртуален пакет, предлаган от libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libgzstream0
    provide functionality of zlib C-library in a C++ iostream
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: pirs-profiles
    profile basd Illumina pair-end Reads Simulator (profile data)
  • dep: zlib1g (>= 1:1.2.0.2)
    compression library - runtime

Изтегляне на pirs

Изтегляне за всички налични архитектури
Архитектура Големина на пакета Големина след инсталиране Файлове
amd64 107,0 кБ371 кБ [списък на файловете]
i386 114,7 кБ381 кБ [списък на файловете]