Пакет: mira-assembler (4.9.6-3build2)
Връзки за mira-assembler
Ресурси за Trisquel:
Изтегляне на пакет-източник mira.
Отговорник:
Original Maintainers:
- Debian Med Packaging Team (Пощенски архив)
- Charles Plessy
- Steffen Moeller
- Tim Booth
- Andreas Tille
- Thorsten Alteholz
- Michael R. Crusoe
Външни препратки:
- Начална страница [chevreux.org]
Подобни пакети:
Whole Genome Shotgun and EST Sequence Assembler
The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.
The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.
The package provides the following executables: Binaries provided:
* mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. * mirabait: a "grep" like tool to select reads with kmers up to 256 bases. * miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files.
Други пакети, свързани с mira-assembler
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-
- dep: libboost-filesystem1.65.1
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-regex1.65.1
- regular expression library for C++
-
- dep: libboost-system1.65.1
- Operating system (e.g. diagnostics support) library
-
- dep: libboost-thread1.65.1
- portable C++ multi-threading
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libexpat1 (>= 2.0.1)
- XML parsing C library - runtime library
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
-
- rec: mira-rfam-12s-rrna
- extract of RFAM 12 rRNA database
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- sug: mira-doc
- documentation for the mira assembler
Изтегляне на mira-assembler
| Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|
| amd64 | 2 173,7 кБ | 6954 кБ | [списък на файловете] |
| i386 | 2 146,3 кБ | 7311 кБ | [списък на файловете] |