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Пакет: last-align (921-1)

Връзки за last-align

last-align

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Изтегляне на пакет-източник last-align.

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Подобни пакети:

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Други пакети, свързани с last-align

  • зависимости
  • препоръчани
  • предложени
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    също и виртуален пакет, предлаган от libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libstdc++6 (>= 6)
    GNU Standard C++ Library v3
  • dep: parallel
    build and execute command lines from standard input in parallel
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: python
    interactive high-level object-oriented language (default version)
  • rec: python-pil
    Python Imaging Library (Pillow fork)

Изтегляне на last-align

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Архитектура Големина на пакета Големина след инсталиране Файлове
amd64 712,6 кБ3279 кБ [списък на файловете]
i386 647,3 кБ3395 кБ [списък на файловете]