Пакет: fasttree (2.1.10-1)
Връзки за fasttree
Ресурси за Trisquel:
Изтегляне на пакет-източник fasttree.
Отговорник:
Original Maintainers:
- Debian Med Packaging Team (Пощенски архив)
- Steffen Moeller
- Thorsten Alteholz
- Andreas Tille
- Roland Fehrenbacher
Външни препратки:
- Начална страница [www.microbesonline.org]
Подобни пакети:
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
Други пакети, свързани с fasttree
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
- dep: libc6 (>= 2.7) [i386]
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
Изтегляне на fasttree
Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
---|---|---|---|
amd64 | 166,4 кБ | 467 кБ | [списък на файловете] |
i386 | 167,9 кБ | 495 кБ | [списък на файловете] |