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[ Източник: discosnp ]
Пакет: discosnp (1.2.6-2)
Връзки за discosnp
Ресурси за Trisquel:
Изтегляне на пакет-източник discosnp.
Отговорник:
Original Maintainers:
- Debian Med Packaging Team (Пощенски архив)
- Olivier Sallou
- Andreas Tille
Външни препратки:
- Начална страница [colibread.inria.fr]
Подобни пакети:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
Други пакети, свързани с discosnp
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-
- dep: bc
- GNU bc arbitrary precision calculator language
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: zlib1g (>= 1:1.2.3.4)
- compression library - runtime
Изтегляне на discosnp
| Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|
| amd64 | 143,9 кБ | 336 кБ | [списък на файловете] |
| i386 | 154,8 кБ | 351 кБ | [списък на файловете] |