Пакет: atac (0~20150903+r2013-3)
Връзки за atac
Ресурси за Trisquel:
Изтегляне на пакет-източник kmer.
- [kmer_0~20150903+r2013-3.dsc]
- [kmer_0~20150903+r2013.orig.tar.gz]
- [kmer_0~20150903+r2013-3.debian.tar.xz]
Отговорник:
Original Maintainers:
- Debian Med Packaging Team (Пощенски архив)
- Afif Elghraoui
Външни препратки:
- Начална страница [kmer.sourceforge.net]
Подобни пакети:
genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.
The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.
Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.
This package is part of the Kmer suite.
Други пакети, свързани с atac
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-
- dep: gnuplot
- Command-line driven interactive plotting program.
също и виртуален пакет, предлаган от gnuplot-nox, gnuplot-qt, gnuplot-x11
-
- dep: leaff
- biological sequence library utilities and applications
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
- dep: libc6 (>= 2.7) [i386]
-
- dep: libfile-which-perl
- Perl module for searching paths for executable programs
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: meryl
- in- and out-of-core kmer counting and utilities
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: python2.7
- Interactive high-level object-oriented language (version 2.7)
Изтегляне на atac
| Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|
| amd64 | 376,2 кБ | 2683 кБ | [списък на файловете] |
| i386 | 417,3 кБ | 3073 кБ | [списък на файловете] |