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Package: unicycler (0.4.8+dfsg-2build1)

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unicycler

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Download Source Package unicycler:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Liubov Chuprikova

External Resources:

Similar packages:

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

Other Packages Related to unicycler

  • depends
  • recommends
  • suggests
  • dep: bcftools
    genomic variant calling and manipulation of VCF/BCF files
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
  • dep: default-jre
    Standard Java or Java compatible Runtime
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libstdc++6 (>= 6)
    GNU Standard C++ Library v3
  • dep: miniasm
    ultrafast de novo assembler for long noisy DNA sequencing reads
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: pilon
    automated genome assembly improvement and variant detection tool
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (>= 3~)
  • dep: python3-setuptools
    Python3 Distutils Enhancements
  • dep: racon
    consensus module for raw de novo DNA assembly of long uncorrected reads
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: spades (>= 3.13.1)
    genome assembler for single-cell and isolates data sets
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: unicycler-data
    hybrid assembly pipeline for bacterial genomes (data package)

Download unicycler

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 855.4 kB3504 kB [list of files]