Package: trf (4.09.1-5)
Links for trf
Trisquel Resources:
Download Source Package trf:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [tandem.bu.edu]
Similar packages:
locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.
Other Packages Related to trf
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
Download trf
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 51.8 kB | 154 kB | [list of files] |
arm64 | 49.9 kB | 142 kB | [list of files] |
armhf | 53.8 kB | 137 kB | [list of files] |
ppc64el | 67.3 kB | 242 kB | [list of files] |