Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> tree-puzzle
etiona  ] [  nabia  ] [  aramo  ]
[ Source: tree-puzzle  ]

Package: tree-puzzle (5.3~rc16+dfsg-9)

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Other Packages Related to tree-puzzle

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libsprng2
    SPRNG Scalable Parallel RNG library -- library package
  • rec: tree-puzzle-doc
    Reconstruction of phylogenetic trees by maximum likelihood (doc)
  • sug: phylip
    package of programs for inferring phylogenies
  • sug: treetool
    Package not available

Download tree-puzzle

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 145.7 kB346 kB [list of files]
arm64 141.3 kB313 kB [list of files]
armhf 149.6 kB285 kB [list of files]
ppc64el 180.9 kB478 kB [list of files]