[ aramo ]
[ Source: shasta ]
Package: shasta (0.8.0-2ubuntu1)
Links for shasta
Trisquel Resources:
Download Source Package shasta:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Shayan Doust
External Resources:
- Homepage [github.com]
Similar packages:
nanopore whole genome assembly (binaries and scripts)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.
Computational methods used by the Shasta assembler include:
* Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads.
* Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.
This package contains the executable binaries (tools) and accommodating scripts.
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Download shasta
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 634.0 kB | 2661 kB | [list of files] |
| arm64 | 627.7 kB | 2659 kB | [list of files] |