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Package: seqtk (1.3-2)

Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Currently, seqtk supports quality based trimming with the phred algorithm, converting fastq to fasta, reverse complementing sequences, extracting or masking subsequences in regions given in a BED/name list file, and more. It contains a subsampling module to sample exactly n sequences or a fraction of sequences.

Seqtk supports both fasta and fastq input files, which can be optionally gzip compressed.

Other Packages Related to seqtk

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download seqtk

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 29.5 kB83 kB [list of files]
arm64 27.9 kB79 kB [list of files]
armhf 27.8 kB63 kB [list of files]
ppc64el 32.8 kB151 kB [list of files]