[ aramo ]
[ Source: sepp ]
Package: sepp (4.5.1+really4.5.1+dfsg-3)
Links for sepp
Trisquel Resources:
Download Source Package sepp:
- [sepp_4.5.1+really4.5.1+dfsg-3.dsc]
- [sepp_4.5.1+really4.5.1+dfsg.orig.tar.xz]
- [sepp_4.5.1+really4.5.1+dfsg-3.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Pierre Gruet
External Resources:
- Homepage [github.com]
Similar packages:
phylogeny with ensembles of Hidden Markov Models
The tool SEPP implementing these methods uses ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.
SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.
Other Packages Related to sepp
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- dep: default-jre
- Standard Java or Java compatible Runtime
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- dep: hmmer
- profile hidden Markov models for protein sequence analysis
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- dep: libgoogle-gson-java
- Converts Java objects into their JSON representation
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- dep: libjenkins-json-java
- Library for transforming Java objects between XML and JSON
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- dep: libjson-java
- library for transforming Java objects and XML to JSON and back again
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: pplacer
- phylogenetic placement and downstream analysis
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
Download sepp
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 158.1 kB | 391 kB | [list of files] |