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Package: sambamba (0.8.2+dfsg-2)

tools for working with SAM/BAM data

Sambamba positions itself as a performant alternative to samtools and provides tools for

 * Powerful filtering with sambamba view --filter
 * Picard-like SAM header merging in the merge tool
 * Optional for operations on whole BAMs
 * Fast copying of a region to a new file with the slice tool
 * Duplicate marking/removal, using the Picard criteria

Other Packages Related to sambamba

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: liblz4-1 (>= 0.0~r127)
    Fast LZ compression algorithm library - runtime
  • dep: libphobos2-ldc-shared98 (>= 1:1.28.0)
    LLVM D Compiler - Standard and runtime libraries
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download sambamba

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 679.0 kB2854 kB [list of files]
arm64 619.1 kB2633 kB [list of files]