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Package: rna-star (2.7.10a+dfsg-1)

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rna-star

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Download Source Package rna-star:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Steffen Moeller
  • Andreas Tille
  • Sascha Steinbiss
  • Nilesh Patra

External Resources:

Similar packages:

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

Other Packages Related to rna-star

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [not ppc64el]
    GCC support library
    dep: libgcc-s1 (>= 3.4.4) [ppc64el]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3

Download rna-star

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,645.2 kB16403 kB [list of files]
arm64 749.5 kB2449 kB [list of files]
ppc64el 788.8 kB2937 kB [list of files]