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[ aramo ]
[ Source: resfinder ]
Package: resfinder (4.1.6-1)
Links for resfinder
Trisquel Resources:
Download Source Package resfinder:
- [resfinder_4.1.6-1.dsc]
- [resfinder_4.1.6.orig-debian-tests-data.tar.bz2]
- [resfinder_4.1.6.orig.tar.bz2]
- [resfinder_4.1.6-1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Nilesh Patra
External Resources:
- Homepage [bitbucket.org]
Similar packages:
identify acquired antimicrobial resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.
Other Packages Related to resfinder
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- dep: kma
- mapping genomic sequences to raw reads directly against redundant databases
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- dep: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-cgecore
- Python3 module for the Center for Genomic Epidemiology
-
- dep: python3-dateutil
- powerful extensions to the standard Python 3 datetime module
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- dep: python3-git
- Python library to interact with Git repositories - Python 3.x
-
- dep: python3-tabulate
- pretty-print tabular data in Python3
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- dep: resfinder-db
- ResFinder database is a curated database of acquired resistance genes
Download resfinder
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 54.9 kB | 315 kB | [list of files] |