Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> q2-types
[  aramo  ]
[ Source: q2-types  ]

Package: q2-types (2021.8.0-1)

Links for q2-types

q2-types

Trisquel Resources:

Download Source Package q2-types:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Liubov Chuprikova
  • Étienne Mollier
  • Steffen Moeller

External Resources:

Similar packages:

QIIME 2 plugin defining types for microbiome analysis

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: 

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,
graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Other Packages Related to q2-types

  • depends
  • recommends
  • suggests
  • dep: libopenblas0
    Optimized BLAS (linear algebra) library (meta)
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biom-format
    Biological Observation Matrix (BIOM) format (Python 3)
  • dep: python3-h5py
    general-purpose Python interface to hdf5
  • dep: python3-ijson
    event-driven JSON parser (Python 3 version)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-setuptools
    Python3 Distutils Enhancements
  • dep: python3-skbio
    Python3 data structures, algorithms, educational resources for bioinformatic
  • dep: qiime (>= 2020.11.1)
    Quantitative Insights Into Microbial Ecology

Download q2-types

Download for all available architectures
Architecture Package Size Installed Size Files
all 74.2 kB684 kB [list of files]