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Package: plasmidid (1.6.5+dfsg-1)

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plasmidid

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Download Source Package plasmidid:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Steffen Moeller

External Resources:

Similar packages:

mapping-based, assembly-assisted plasmid identification tool

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.

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Download plasmidid

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 45.7 kB329 kB [list of files]