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Package: pizzly (0.37.3+ds-6)

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

  • depends
  • recommends
  • suggests
  • dep: kallisto
    near-optimal RNA-Seq quantification
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: python3-h5py
    general-purpose Python interface to hdf5

Download pizzly

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 290.9 kB751 kB [list of files]
arm64 268.0 kB655 kB [list of files]
armhf 283.1 kB598 kB [list of files]
ppc64el 308.2 kB863 kB [list of files]