Package: pizzly (0.37.3+ds-6)
Links for pizzly
Trisquel Resources:
Download Source Package pizzly:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
- Nilesh Patra
External Resources:
- Homepage [github.com]
Similar packages:
Identifies gene fusions in RNA sequencing data
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
Other Packages Related to pizzly
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- dep: kallisto
- near-optimal RNA-Seq quantification
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [not armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: python3-h5py
- general-purpose Python interface to hdf5
Download pizzly
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 290.9 kB | 751 kB | [list of files] |
arm64 | 268.0 kB | 655 kB | [list of files] |
armhf | 283.1 kB | 598 kB | [list of files] |
ppc64el | 308.2 kB | 863 kB | [list of files] |