Package: physamp (1.1.0-3)

Links for physamp

Trisquel Resources:

Download Source Package physamp:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Andreas Tille
Julien Dutheil

External Resources:

Homepage [jydu.github.io]

Similar packages:

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

Other Packages Related to physamp

depends

recommends

suggests

dep: libbpp-core4 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl12 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq12 (>= 2.4.1)

Bio++ Sequence library
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.3.1) [not armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3

Download physamp

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	175.7 kB	1661 kB	[list of files]
arm64	171.8 kB	1633 kB	[list of files]
armhf	184.4 kB	1655 kB	[list of files]
ppc64el	180.8 kB	1761 kB	[list of files]

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