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Package: ntcard (1.2.2+dfsg-3)

Streaming algorithm to estimate cardinality in genomics datasets

As input it takes file(s) in fasta, fastq, sam, or bam formats and computes the total number of distinct k-mers, F0, and also the k-mer coverage frequency histogram, fi, i>=1.

Other Packages Related to ntcard

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 36.3 kB165 kB [list of files]
arm64 34.7 kB145 kB [list of files]
armhf 35.3 kB107 kB [list of files]
ppc64el 40.3 kB217 kB [list of files]