Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> lefse
etiona  ] [  nabia  ] [  aramo  ]
[ Source: lefse  ]

Package: lefse (1.1.2-1)

determine features of organisms, clades, taxonomic units, genes

LEfSe (Linear discriminant analysis Effect Size) determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.

Other Packages Related to lefse

  • depends
  • recommends
  • suggests
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biom-format
    Biological Observation Matrix (BIOM) format (Python 3)
  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-rpy2
    Python3 interface to the GNU R language and environment (version 2)
    also a virtual package provided by python3-rpy2
  • dep: r-cran-coin
    GNU R package providing conditional inference procedures

Download lefse

Download for all available architectures
Architecture Package Size Installed Size Files
all 56.7 kB271 kB [list of files]