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Package: kleborate (2.2.0-1)

Links for kleborate

kleborate

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Download Source Package kleborate:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Étienne Mollier

External Resources:

Similar packages:

tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

Other Packages Related to kleborate

  • depends
  • recommends
  • suggests
  • dep: kaptive
    obtain information about K and O types for Klebsiella genome assemblies
  • dep: kaptive-data
    reference data for kaptive for Klebsiella genome assemblies
  • dep: mash
    fast genome and metagenome distance estimation using MinHash
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-distutils
    distutils package for Python 3.x

Download kleborate

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 8,571.3 kB62499 kB [list of files]
arm64 8,571.3 kB62499 kB [list of files]
ppc64el 8,570.5 kB65523 kB [list of files]