Package: kallisto (0.46.2+dfsg-3)

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Download Source Package kallisto:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Andreas Tille

External Resources:

Homepage [pachterlab.github.io]

Similar packages:

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

Other Packages Related to kallisto

depends

recommends

suggests

dep: libc6 (>= 2.33)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]

GCC support library

dep: libgcc-s1 (>= 3.4.4) [ppc64el]

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 6) [not ppc64el]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 9) [ppc64el]
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

Download kallisto

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	218.0 kB	622 kB	[list of files]
arm64	195.0 kB	530 kB	[list of files]
armhf	209.4 kB	448 kB	[list of files]
ppc64el	238.8 kB	722 kB	[list of files]

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