[ aramo ]
[ Source: ivar ]
Package: ivar (1.3.1+dfsg-4)
Links for ivar
Trisquel Resources:
Download Source Package ivar:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Étienne Mollier
External Resources:
- Homepage [github.com]
Similar packages:
functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
Other Packages Related to ivar
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
Download ivar
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 201.2 kB | 1407 kB | [list of files] |
| arm64 | 194.4 kB | 1363 kB | [list of files] |