Package: gmap (2021-12-17+ds-1)

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Homepage [research-pub.gene.com]

Similar packages:

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

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dep: libc6 (>= 2.34)

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dep: perl

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dep: zlib1g (>= 1:1.2.6)

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Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	7,489.0 kB	67266 kB	[list of files]
arm64	5,375.1 kB	42126 kB	[list of files]
armhf	5,314.9 kB	41644 kB	[list of files]
ppc64el	5,952.1 kB	44538 kB	[list of files]

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