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Package: cd-hit (4.8.1-4)

suite of programs designed to quickly group sequences

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.

Other Packages Related to cd-hit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11) [not armhf]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 5.2) [armhf]
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 508.3 kB1057 kB [list of files]
arm64 509.7 kB1001 kB [list of files]
armhf 499.8 kB1110 kB [list of files]
ppc64el 534.3 kB1340 kB [list of files]