Package: canu (2.0+dfsg-2)

Links for canu

Trisquel Resources:

Download Source Package canu:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainer:

Debian Med Packaging Team (Mail Archive)

External Resources:

Homepage [canu.readthedocs.org]

Similar packages:

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Other Packages Related to canu

depends

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suggests

dep: gnuplot

Command-line driven interactive plotting program.
also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libfilesys-df-perl

Module to obtain filesystem disk space information
dep: libgcc-s1 (>= 3.0) [not armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: mhap

locality-sensitive hashing to detect long-read overlaps
dep: perl

Larry Wall's Practical Extraction and Report Language

sug: nanopolish

consensus caller for nanopore sequencing data
sug: pbgenomicconsensus

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Download canu

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	1,288.2 kB	8944 kB	[list of files]
arm64	1,238.8 kB	8366 kB	[list of files]
armhf	1,205.5 kB	6284 kB	[list of files]
ppc64el	1,452.1 kB	12682 kB	[list of files]

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