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Package: belvu (4.44.1+dfsg-7build1)

multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues. 

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Other Packages Related to belvu

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libcairo2 (>= 1.2.4)
    Cairo 2D vector graphics library
  • dep: libcurl4 (>= 7.16.2)
    easy-to-use client-side URL transfer library (OpenSSL flavour)
  • dep: libgbtools0 (>= 4.44.1+dfsg)
    library for visualising sequence alignments
  • dep: libgcc-s1 (>= 3.5) [armhf]
    GCC support library
  • dep: libglib2.0-0 (>= 2.22.0)
    GLib library of C routines
  • dep: libgtk2.0-0 (>= 2.10.0) [not armhf]
    GTK graphical user interface library - old version
    dep: libgtk2.0-0 (>= 2.12.0) [armhf]
  • dep: libpango-1.0-0 (>= 1.14.0)
    Layout and rendering of internationalized text
  • dep: libstdc++6 (>= 4.1.1)
    GNU Standard C++ Library v3

Download belvu

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 931.3 kB1105 kB [list of files]
arm64 925.0 kB1085 kB [list of files]
armhf 928.1 kB1040 kB [list of files]
ppc64el 950.0 kB1237 kB [list of files]